Description

Ensembl Variant Effect Predictor (VEP). The output-file-format is controlled through task.ext.args.

Input

Name
Description
Pattern

0 ()

1 ()

2 ()

genome (string)

which genome to annotate with

species (string)

which species to annotate with

cache_version (integer)

which version of the cache to annotate with

cache (file)

path to VEP cache (optional)

0 ()

1 ()

extra_files (file)

path to file(s) needed for plugins (optional)

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

Tools

ensemblvep Documentation

VEP determines the effect of your variants (SNPs, insertions, deletions, CNVs or structural variants) on genes, transcripts, and protein sequence, as well as regulatory regions.

License: Apache-2.0
Authors