Introduction
On this page you can see the beating heart of sanger-tol - the size of our community and the output of our work.
Please bear in mind the following points when looking over these numbers:
- Pipelines maybe worked on before they are transferred to sanger-tol. The age, stars and other metrics of the original parent repository are not shown.
- Metrics are for the default (
main) branch only - Commits and contributors are only counted if associated with a GitHub account
nextflow pullandnextflow runuses git to clone a remote repo the first time it runs, so the clones count gives some idea of usage. However:- Unique cloners is based on IP address, so will under-represent institutional users sharing a single external IP address
- Unique cloners is based on IP address, so will over-represent cloud users using multiple IP addresses
- Traditional HPC centres may share workflow installations, so only have one clone for many users / pipeline runs
- Cloud users will typically spin up a new instance and clone the workflow every time that they run a pipeline.
- Clone counts and repositoriy views are only available for two weeks - longer term data collection for sanger-tol repos started in July 2023 This is when we started counting the totals.
- Metrics are fetched once per day (last checked 2024-12-21).
Community
The numbers below track our growth over the various channels that the sanger-tol community operates in.
Click a number to see how the community has grown over time
GitHub organisation members
We use GitHub to manage all of the code written for sanger-tol. It's a fantastic platform and provides a huge number of tools. We have a GitHub organisation called sanger-tol.
It is not required to be a member of the sanger-tol GitHub organisation to contribute. However, members get the sanger-tol logo listed on their profile page and full write-access to all sanger-tol repositories.
By default, organisation membership is private. This is why you'll see a lower number if you visit the sanger-tol organisation page and are not a member.
GitHub contributors
Anybody can fork sanger-tol repositories and open a pull-request. Here we count how many different people have contributed at least one commit to an sanger-tol repository, or created or commented on an issue or pull-request.
Plot truncated to start of 2022 (some pipelines moved to sanger-tol so have older contributions).
Code stats
Whilst we always prefer quality over quantity, these numbers reflect the work output from the sanger-tol community.
Repository traffic
Every time a nextflow user pulls a sanger-tol pipeline, the repository is cloned. Here we can track how much that happens across all sanger-tol repositories. Please note that these numbers come with some caveats [ see more ].
Additionally, GitHub tracks how many times people view repository web pages on github.com.
Pull Requests
When people contribute code to a sanger-tol repository, we conduct a "Pull request" - other members of the sanger-tol community review the proposed code and make suggestions, before merging into the main repository.
Pull Request response times
Pull-requests are reviewed by the sanger-tol community - they can contain discussion on the code and can be merged and closed. We aim to be prompt with reviews and merging. Note that some PRs can be a simple type and so very fast to merge, others can be major pipeline updates.
First response is when a comment is made by a GitHub user other than the original PR author
Issues
GitHub issues can be created to log feature requests, bug reports or questions.
Issue response times
A sign of an active community is a quick response time to issues. Here we see a frequency histogram of how long it takes to respond to and close issues.
First response is when a comment is made by a GitHub user other than the original issue author
Contributor Leaderboard
We value each and every contribution to sanger-tol, no matter how small. However, that doesn't mean that we can not get competitive!
Here are the latest stats of who has contributed the greatest number of commits.
Remember
- There is more to contributing than commits! We're not counting issue comments, reviews or anything else here.
- People merging pull-requests get bonus commit counts from those merge commits.
- Some people commit often, others not so much. So it's not a perfect representation of amount of work - just a bit of fun!
mainbranch only, and all of the other caveats..
@DLBPointon
@mashehu
@ewels
@muffato
@nf-core-bot
@yumisims
@priyanka-surana
@weaglesBio
@jfy133
@gq1
@FranBonath
@BethYates
@renbot-bio
@alxndrdiaz
@christopher-hakkaart
@tkchafin
@FriederikeHanssen
@apeltzer
@maxulysse
@zb32
@edmundmiller
@ggabernet
@mribeirodantas
@drpatelh
@JoseEspinosa
@SandraBabirye
@mirpedrol
@mahesh-panchal
@ksenia-krasheninnikova
@bjlang
@alneberg
@medulka
@renovate[bot]
@nvnieuwk
@LouisLeNezet
@lescai
@chriswyatt1
@elinkronander
@alvaromartmart
@sven1103
@joaquimgamero
@KevinMenden
@llewellyn-sl
@sateeshperi
@sofiahag
@CarsonJM
@abhi18av
@eeaunin
@BatoolMM
@cmatKhan
@chlazaris
@reichan1998
@evanfloden
@dependabot[bot]
@EmelineFavreau
@jonasscheid
@rivera10
@Joon-Klaps
@SPPearce
@zhan4429
@aanil
@erikrikarddaniel
@jcurado-flomics
@heylf
@ziadbkh
@kubranarci
@github-actions[bot]
@matq007
@itrujnara
@nictru
@olgabot
@AlexVCaron
@Snorkan
@grst
@nickhsmith
@atrigila
@Krannich479
@AnnaSyme
@matthdsm
@lassefolkersen
@MatthiasZepper
@scheckley
@alihkz94
@paulineauffret
@phue
@pinin4fjords
@daisymut
@drewjbeh
@PhilPalmer
@telatin
@MinosBiosciences
@grantn5
@Midnighter
@sanger-tolsoft
@piotr-faba-ardigen
@bbartholdy
@benbfly
@adamrtalbot
@georgiesamaha
@jasmezz
@MizouziE
@jonoave
@ErikDanielsson
@rplanel
@pontus
@makrez
@bozmik
@snafees
@TCLamnidis
@arnaudbore
@ignaciot
@fmalmeida
@sujaikumar
@scorreardPipeline numbers
All sanger-tol pipelines are only considered stable when they have at least one release. Until then, they are classed as "in development".
Pipelines
Click a row to see detailed statistics for that repository.
| Name | Age | Releases | Committers | Commits | Stargazers | Watchers | Network Forks | Clones | Unique cloners | Repo views | Unique repo visitors | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Total: | 15 pipelines | 50 | 114 unique | 12817 | 112 | 118 | 235 | 19100 | 4124 | 78730 | 8840 | |
| sanger-tol/blobtoolkit | 3 years | 5 | 7 | 626 | 11 | 7 | 4 | 1589 | 317 | 6492 | 859 | |
| sanger-tol/ensemblgenedownload | 2 years | 5 | 3 | 145 | 1 | 6 | 2 | 468 | 161 | 573 | 123 | |
| sanger-tol/ensemblrepeatdownload | 2 years | 3 | 3 | 153 | 1 | 6 | 1 | 439 | 146 | 509 | 96 | |
| sanger-tol/genomeassembly | 2 years | 0 | 7 | 144 | 20 | 12 | 3 | 1985 | 345 | 11852 | 1197 | |
| sanger-tol/genomenote | 3 years | 10 | 7 | 590 | 24 | 8 | 6 | 2472 | 514 | 9278 | 1230 | |
| sanger-tol/insdcdownload | 2 years | 5 | 4 | 216 | 1 | 7 | 2 | 752 | 238 | 1479 | 182 | |
| sanger-tol/readmapping | 3 years | 7 | 5 | 376 | 11 | 6 | 6 | 1089 | 251 | 7949 | 859 | |
| sanger-tol/sequencecomposition | 2 years | 2 | 3 | 145 | 2 | 6 | 1 | 496 | 150 | 517 | 106 | |
| sanger-tol/treeval | 2 years | 3 | 6 | 2277 | 23 | 7 | 5 | 4324 | 690 | 24445 | 2491 | |
| sanger-tol/variantcalling | 3 years | 6 | 6 | 289 | 4 | 10 | 3 | 1123 | 287 | 4165 | 497 | |
| sanger-tol/curationpretext | 1 year | 2 | 5 | 178 | 6 | 8 | 4 | 1665 | 448 | 3671 | 514 | |
| sanger-tol/ascc | 1 year | 0 | 4 | 414 | 4 | 8 | 0 | 2217 | 401 | 7124 | 548 | |
| sanger-tol/longreadmag | 9 months | 0 | 1 | 2 | 1 | 5 | 0 | 272 | 82 | 150 | 43 | |
| sanger-tol/genealignment | 6 months | 0 | 1 | 1 | 0 | 4 | 0 | 57 | 46 | 95 | 28 | |
| sanger-tol/ear | 5 months | 2 | 1 | 53 | 0 | 5 | 0 | 151 | 47 | 430 | 66 | |
| sanger-tol/bioscan_anospp_metadata | 3 years | 0 | 0 | 0 | 1 | 0 | ||||||
| sanger-tol/bioscan_sciops | 1 year | 0 | 0 | 0 | 1 | 0 | ||||||
| sanger-tol/bioscan_bold | 7 months | 0 | 0 | 0 | 1 | 0 | ||||||
| sanger-tol/ancharch | 6 months | 0 | 0 | 0 | 1 | 0 | ||||||
| sanger-tol/MicroFinder | 3 months | 0 | 0 | 3 | 3 | 2 | ||||||
| sanger-tol/Pretext-curation-tools | 2 months | 0 | 0 | 0 | 2 | 0 | ||||||
| sanger-tol/rapid-curation | 2 months | 0 | 0 | 0 | 2 | 1 | ||||||
| sanger-tol/nf-core-website | 2 months | 0 | 100 | 7208 | 0 | 0 | 195 | 1 | 1 | 1 | 1 | |
| sanger-tol/badass-ops | 2 days | 0 | 0 | 0 | 2 | 0 | ||||||
| Name | Age | Releases | Committers | Commits | Stargazers | Watchers | Network Forks | Clones | Unique cloners | Repo views | Unique repo visitors |