Introduction
On this page you can see the beating heart of sanger-tol - the size of our community and the output of our work.
Please bear in mind the following points when looking over these numbers:
- Pipelines maybe worked on before they are transferred to sanger-tol. The age, stars and other metrics of the original parent repository are not shown.
- Metrics are for the default (
main) branch only - Commits and contributors are only counted if associated with a GitHub account
nextflow pullandnextflow runuses git to clone a remote repo the first time it runs, so the clones count gives some idea of usage. However:- Unique cloners is based on IP address, so will under-represent institutional users sharing a single external IP address
- Unique cloners is based on IP address, so will over-represent cloud users using multiple IP addresses
- Traditional HPC centres may share workflow installations, so only have one clone for many users / pipeline runs
- Cloud users will typically spin up a new instance and clone the workflow every time that they run a pipeline.
- Clone counts and repositoriy views are only available for two weeks - longer term data collection for sanger-tol repos started in July 2023 This is when we started counting the totals.
- Metrics are fetched once per day (last checked 2025-06-30).
Community
The numbers below track our growth over the various channels that the sanger-tol community operates in.
Click a number to see how the community has grown over time
GitHub organisation members
We use GitHub to manage all of the code written for sanger-tol. It's a fantastic platform and provides a huge number of tools. We have a GitHub organisation called sanger-tol.
It is not required to be a member of the sanger-tol GitHub organisation to contribute. However, members get the sanger-tol logo listed on their profile page and full write-access to all sanger-tol repositories.
By default, organisation membership is private. This is why you'll see a lower number if you visit the sanger-tol organisation page and are not a member.
GitHub contributors
Anybody can fork sanger-tol repositories and open a pull-request. Here we count how many different people have contributed at least one commit to an sanger-tol repository, or created or commented on an issue or pull-request.
Plot truncated to start of 2022 (some pipelines moved to sanger-tol so have older contributions).
Code stats
Whilst we always prefer quality over quantity, these numbers reflect the work output from the sanger-tol community.
Repository traffic
Every time a nextflow user pulls a sanger-tol pipeline, the repository is cloned. Here we can track how much that happens across all sanger-tol repositories. Please note that these numbers come with some caveats [ see more ].
Additionally, GitHub tracks how many times people view repository web pages on github.com.
Pull Requests
When people contribute code to a sanger-tol repository, we conduct a "Pull request" - other members of the sanger-tol community review the proposed code and make suggestions, before merging into the main repository.
Pull Request response times
Pull-requests are reviewed by the sanger-tol community - they can contain discussion on the code and can be merged and closed. We aim to be prompt with reviews and merging. Note that some PRs can be a simple type and so very fast to merge, others can be major pipeline updates.
First response is when a comment is made by a GitHub user other than the original PR author
Issues
GitHub issues can be created to log feature requests, bug reports or questions.
Issue response times
A sign of an active community is a quick response time to issues. Here we see a frequency histogram of how long it takes to respond to and close issues.
First response is when a comment is made by a GitHub user other than the original issue author
Contributor Leaderboard
We value each and every contribution to sanger-tol, no matter how small. However, that doesn't mean that we can not get competitive!
Here are the latest stats of who has contributed the greatest number of commits.
Remember
- There is more to contributing than commits! We're not counting issue comments, reviews or anything else here.
- People merging pull-requests get bonus commit counts from those merge commits.
- Some people commit often, others not so much. So it's not a perfect representation of amount of work - just a bit of fun!
mainbranch only, and all of the other caveats..
@DLBPointon
@muffato
@yumisims
@weaglesBio
@priyanka-surana
@prototaxites
@gq1
@tkchafin
@BethYates
@alxndrdiaz
@SandraBabirye
@zb32
@ksenia-krasheninnikova
@eeaunin
@mahesh-panchal
@yz533cb
@reichan1998
@juliaapolonio
@sanger-tolsoft
@sainsachiko
@nf-core-bot
@sujaikumar
@scorreardPipeline numbers
All sanger-tol pipelines are only considered stable when they have at least one release. Until then, they are classed as "in development".
Pipelines
Click a row to see detailed statistics for that repository.
| Name | Age | Releases | Committers | Commits | Stargazers | Watchers | Network Forks | Clones | Unique cloners | Repo views | Unique repo visitors | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Total: | 16 pipelines | 83 | 23 unique | 7214 | 124 | 100 | 49 | 32162 | 6522 | 107061 | 13097 | |
| sanger-tol/blobtoolkit | 3 years | 8 | 11 | 851 | 12 | 6 | 5 | 2868 | 545 | 9718 | 1414 | |
| sanger-tol/ensemblgenedownload | 3 years | 5 | 3 | 145 | 1 | 6 | 2 | 510 | 196 | 616 | 135 | |
| sanger-tol/ensemblrepeatdownload | 3 years | 3 | 3 | 153 | 1 | 6 | 1 | 472 | 174 | 541 | 111 | |
| sanger-tol/genomeassembly | 3 years | 0 | 8 | 296 | 20 | 13 | 4 | 2865 | 513 | 13724 | 1630 | |
| sanger-tol/genomenote | 3 years | 13 | 7 | 732 | 26 | 5 | 8 | 3643 | 722 | 12098 | 1674 | |
| sanger-tol/insdcdownload | 3 years | 5 | 4 | 217 | 1 | 7 | 2 | 847 | 301 | 1593 | 210 | |
| sanger-tol/readmapping | 3 years | 10 | 5 | 404 | 13 | 4 | 6 | 1693 | 444 | 10022 | 1182 | |
| sanger-tol/sequencecomposition | 3 years | 2 | 3 | 144 | 2 | 6 | 2 | 710 | 227 | 983 | 216 | |
| sanger-tol/treeval | 3 years | 7 | 6 | 2428 | 25 | 7 | 5 | 6176 | 960 | 29803 | 3138 | |
| sanger-tol/variantcalling | 3 years | 9 | 9 | 379 | 8 | 9 | 9 | 1866 | 453 | 8478 | 906 | |
| sanger-tol/curationpretext | 2 years | 9 | 7 | 376 | 8 | 7 | 5 | 2968 | 727 | 6270 | 986 | |
| sanger-tol/ascc | 2 years | 3 | 5 | 721 | 5 | 7 | 0 | 4153 | 730 | 10384 | 991 | |
| sanger-tol/genealignment | 1 year | 0 | 1 | 1 | 0 | 4 | 0 | 95 | 78 | 134 | 40 | |
| sanger-tol/ear | 11 months | 3 | 1 | 143 | 0 | 4 | 0 | 738 | 169 | 1166 | 140 | |
| sanger-tol/metagenomeassembly | 1 year | 6 | 2 | 223 | 2 | 5 | 0 | 2327 | 229 | 1140 | 285 | |
| sanger-tol/zippypretext | 3 months | 0 | 1 | 1 | 0 | 4 | 0 | 231 | 54 | 391 | 39 | |
| Name | Age | Releases | Committers | Commits | Stargazers | Watchers | Network Forks | Clones | Unique cloners | Repo views | Unique repo visitors |