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Initiatives
Earth Biogenome Project
Why sequence all eukaryotes?
Mark Blaxter, John M Archibald, Anna K Childers, Jonathan A Coddington, Keith A Crandall, et al.
Proceedings of the National Academy of Sciences (2022); doi: 10.1073/pnas.2115636118
The Earth Biogenome Project 2020: Starting the Clock
Harris A. Lewin, Stephen Richards, Erez Lieberman Aiden, Miguel L. Allende, John M. Archibald, et al.
Proceedings of the National Academy of Sciences (2022); doi: 10.1073/pnas.2115635118
Standards recommendations for the Earth Biogenome Project
Mara K. N. Lawniczak, Richard Durbin, Paul Flicek, Kerstin Lindblad-Toh, Xiaofeng Wei, et al.
Proceedings of the National Academy of Sciences (2022) doi: 10.1073/pnas.2115639118
Darwin Tree of Life
Sequence locally, think globally: The Darwin Tree of Life Project
Darwin Tree of Life Project Consortium
Proceedings of the National Academy of Sciences (2022); doi: 10.1073/pnas.2115642118
Pipelines
Genome After Party
BlobToolKit – interactive quality assessment of genome assemblies
Richard Challis, Edward Richards, Jeena Rajan, Guy Cochrane, and Mark Blaxter
G3 Genes|Genomes|Genetics (2020); doi: 10.1534/g3.119.400908
Tools
Genomes on a Tree (GoaT): A versatile, scalable search engine for genomic and sequencing project metadata across the eukaryotic tree of life
Richard Challis, Sujai Kumar, Cibele Sotero-Caio, Max Brown, and Mark Blaxter
Wellcome Open Research (2023); doi: 10.12688/wellcomeopenres.18658.1
Genome Notes
Launching the Tree of Life Gateway
Jonathan Threlfall, and Mark Blaxter
Wellcome Open Research (2021); doi: 10.12688/wellcomeopenres.16913.1
To access all genome notes published, visit the Tree of Life Gateway.