Description

A python workflow that assembles mitogenomes from Pacbio HiFi reads

Input

Name
Description
Pattern

0 ()

1 ()

0 ()

0 ()

0 ()

0 ()

Output

Name
Description
Pattern

fasta ()

stats ()

gb ()

gff ()

all_potential_contigs ()

contigs_annotations ()

contigs_circularization ()

contigs_filtering ()

coverage_mapping ()

coverage_plot ()

final_mitogenome_annotation ()

final_mitogenome_choice ()

final_mitogenome_coverage ()

potential_contigs ()

reads_mapping_and_assembly ()

shared_genes ()

versions ()

Tools

mitohifi.py Documentation

A python workflow that assembles mitogenomes from Pacbio HiFi reads

doi: 10.1101/2022.12.23.521667License: MIT
nf-core pipelines with this module
genomeassembly
Authors