Description

A python workflow that assembles mitogenomes from Pacbio HiFi reads

Input

Name
Description
Pattern

0 ()

1 ()

0 ()

1 ()

0 ()

1 ()

input_mode (string)

Specifies type of input - reads or contigs

{reads,contigs}

mito_code (integer)

Integer reference number of mitochondrial genetic code - see https://www.ncbi.nlm.nih.gov/Taxonomy/Utils/wprintgc.cgi for details.

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

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Tools

mitohifi.py Documentation

A python workflow that assembles mitogenomes from Pacbio HiFi reads

doi: 10.1101/2022.12.23.521667License: MIT
nf-core pipelines with this module
genomeassembly
Authors