Description

A python workflow that assembles mitogenomes from Pacbio HiFi reads

Input

Name
Description
Pattern

0 ()

1 ()

ref_fa (file)

Reference sequence

*.{fa,fasta}

ref_gb (file)

Reference annotation

*.{gb}

input_mode (string)

Specifies type of input - reads or contigs

{r,c}

mito_code (string)

Mitochondrial genetic code

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

Tools

mitohifi.py Documentation

A python workflow that assembles mitogenomes from Pacbio HiFi reads

doi: 10.1101/2022.12.23.521667License: MIT
nf-core pipelines with this module
genomeassembly
Authors