modules/
MultiQC

Aggregate results from bioinformatics analyses across many samples into a single report

QC bioinformatics tools Beautiful stand-alone HTML report

https://github.com/nf-core/modules/tree/master/modules/nf-core/multiqc

Description

Aggregate results from bioinformatics analyses across many samples into a single report

Input

Name

Description

Pattern

`multiqc_files` (file)

List of reports / files recognised by MultiQC, for example the html and zip output of FastQC

`multiqc_config` (file)

Optional config yml for MultiQC

*.{yml,yaml}

`extra_multiqc_config` (file)

Second optional config yml for MultiQC. Will override common sections in multiqc_config.

*.{yml,yaml}

`multiqc_logo` (file)

Optional logo file for MultiQC

*.{png}

`replace_names` (file)

Optional two-column sample renaming file. First column a set of patterns, second column a set of corresponding replacements. Passed via MultiQC's --replace-names option.

*.{tsv}

`sample_names` (file)

Optional TSV file with headers, passed to the MultiQC --sample_names argument.

*.{tsv}

Output

Name

Description

Pattern

`0` ()

Tools

multiqc Documentation

MultiQC searches a given directory for analysis logs and compiles a HTML report. It's a general use tool, perfect for summarising the output from numerous bioinformatics tools.

License: GPL-3.0-or-later