Description

Aggregate results from bioinformatics analyses across many samples into a single report

Input

Name
Description
Pattern

multiqc_files (file)

List of reports / files recognised by MultiQC, for example the html and zip output of FastQC

multiqc_config (file)

Optional config yml for MultiQC

*.{yml,yaml}

extra_multiqc_config (file)

Second optional config yml for MultiQC. Will override common sections in multiqc_config.

*.{yml,yaml}

Optional logo file for MultiQC

*.{png}

replace_names (file)

Optional two-column sample renaming file. First column a set of patterns, second column a set of corresponding replacements. Passed via MultiQC's --replace-names option.

*.{tsv}

sample_names (file)

Optional TSV file with headers, passed to the MultiQC --sample_names argument.

*.{tsv}

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

0 ()

Tools

multiqc Documentation

MultiQC searches a given directory for analysis logs and compiles a HTML report. It's a general use tool, perfect for summarising the output from numerous bioinformatics tools.

License: GPL-3.0-or-later