Description

Detecting and estimating inter-sample DNA contamination became a crucial quality assessment step to ensure high quality sequence reads and reliable downstream analysis.

Input

Name
Description
Pattern

0 ()

1 ()

2 ()

refvcf (file)

The input VCF file contains (1) external genotype information and/or (2) allele frequency information as AF entry or AC/AN entries in the INFO field.

*.{vcf,vcf.gz}

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

Tools

verifybamid Documentation

verifyBamID is a software that verifies whether the reads in particular file match previously known genotypes for an individual (or group of individuals), and checks whether the reads are contaminated as a mixture of two samples.

https://github.com/statgen/verifyBamIDdoi: 10.1016/j.ajhg.2012.09.004License: GPL v3
Authors