Description

Detecting and estimating inter-sample DNA contamination became a crucial quality assessment step to ensure high quality sequence reads and reliable downstream analysis.

Input

Name
Description
Pattern

0 ()

1 ()

2 ()

0 ()

1 ()

2 ()

refvcf (file)

Reference panel VCF with genotype information, for generation of .UD .mu .bed files [Optional]

*.vcf

references (file)

reference file [Required]

*.fasta

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

Tools

verifybamid2 Documentation

A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.

https://github.com/Griffan/VerifyBamIDdoi: 10.1101/gr.246934.118License: MIT
Authors