Description

A tool to evaluate variant calling performance by comparing a query VCF against a truth VCF.

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Tools

aardvark Documentation

A benchmarking tool that constructs haplotype sequences and it enables basepair-level comparisons that work across all variant types. The program evaluates genotypes using traditional, strict exact-match scoring, while also allowing for implicit partial credit when variant calls are an inexact but close match.

https://github.com/PacificBiosciences/aardvarkdoi: 10.1101/2025.10.03.680257License: MIT
Authors