Description

Trim sequencing adapters and collapse overlapping reads

Input

Name
Description
Pattern

0 ()

1 ()

adapterlist (file)

Optional text file containing list of adapters to look for for removal with one adapter per line. Otherwise will look for default adapters (see AdapterRemoval man page), or can be modified to remove user-specified adapters via ext.args.

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

Tools

adapterremoval Documentation

The AdapterRemoval v2 tool for merging and clipping reads.

License: GPL v3
Authors