Description

The script reads a gff annotation file, and create two output files, one contains the gene models with ORF passing the test, the other contains the rest. By default the test is "> 100" that means all gene models that have ORF longer than 100 Amino acids, will pass the test.

Input

Name
Description
Pattern

0 ()

1 ()

0 ()

Output

Name
Description
Pattern

passed_gff ()

failed_gff ()

versions ()

Tools

agat Documentation

Another Gff Analysis Toolkit (AGAT). Suite of tools to handle gene annotations in any GTF/GFF format.

https://github.com/NBISweden/AGATdoi: 10.5281/zenodo.3552717License: GPL v3
Authors