Description

A tool to parse and summarise results from antimicrobial peptides tools and present functional classification.

Input

Name
Description
Pattern

0 ()

1 ()

faa_input (file)

The path to the file corresponding to the respective protein fasta files with '.faa' extension. File names have to contain the corresponding sample name, i.e. sample_1.faa

*.faa

opt_amp_db (directory)

The path to the folder containing the fasta and tsv database files.

*/

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

Tools

ampcombi Documentation

This tool parses the results of amp prediction tools into a single table and aligns the hits against a reference database of antimicrobial peptides for functional classifications.

https://github.com/Darcy220606/AMPcombi/tree/devLicense: MIT
Authors