Description

A module to create embeddings of B-cell receptor (BCR) or T-cell receptor (TCR) amino acid sequences using amulety.

Input

Name
Description
Pattern

0 ()

1 ()

chain (string)

The chain to use for the embeddings. Can be either 'H' (high diversity chain: BCR heavy or TCR beta or delta), 'L' (low diversity chain: BCR light or TCR alpha or gamma) or 'HL'/'LH' (BCR heavy + light, and TCR alpha + beta or gamma + delta).

model (string)

The embedding model to use. Options are detailed on the amulety documentation.

Output

Name
Description
Pattern

0 ()

0 ()

Tools

amulety Documentation

Python package to create embeddings of BCR and TCR amino acid sequences.

https://github.com/immcantation/amuletydoi: 10.1101/2025.03.21.644583License: GPL v3
Authors