Description

Plot ancestrally linked busco genes from ancestral extract output.

Input

Name
Description
Pattern

meta (map)

Groovy Map containing sample information e.g. [ id:'sample1' ]

comp_location (file)

Complete location busco painter output.

*.tsv

meta2 (map)

Groovy Map containing sample information e.g. [ id:'sample1' ]

fai (file)

Assembly index file

*.fai

Output

Name
Description
Pattern

pdf_plot

meta (map)

Groovy Map containing sample information e.g. [ id:'sample1' ]

*_buscopainter.pdf (file)

A PDF plot showing busco gene linkage maps.

png_plot

meta (map)

Groovy Map containing sample information e.g. [ id:'sample1' ]

*_buscopainter.png (file)

A PNG plot showing busco gene linkage maps.

versions_r

${task.process} (string)

The name of the process

R (string)

The name of the tool

R --version | grep -oP "\d+\.\d+\.\d+" (eval)

The expression to obtain the version of the tool

versions_plotbuscopainter

${task.process} (string)

The name of the process

plot_buscopainter.R (string)

The name of the tool

1.0.0 (string)

The expression to obtain the version of the tool

Topics

Name
Description
Pattern

versions

${task.process} (string)

The name of the process

R (string)

The name of the tool

R --version | grep -oP "\d+\.\d+\.\d+" (eval)

The expression to obtain the version of the tool

${task.process} (string)

The name of the process

plot_buscopainter.R (string)

The name of the tool

1.0.0 (string)

The expression to obtain the version of the tool

Tools

plot_buscopainter Documentation

Generate BUSCO ancestral linkage plots (PDF/PNG) from the ancestrally linked BUSCO TSV produced by the extract module.

License: GPL v2.0
Pipelines with this module
genomenote
Authors