Description

antiSMASH allows the rapid genome-wide identification, annotation and analysis of secondary metabolite biosynthesis gene clusters.

Input

Name
Description
Pattern

0 ()

1 ()

databases (directory)

Downloaded AntiSMASH databases (e.g. in the AntiSMASH installation directory "data/databases")

*/

antismash_dir (directory)

A local copy of an AntiSMASH installation folder. This is required when running with docker and singularity (not required for conda), due to attempted 'modifications' of files during database checks in the installation directory, something that cannot be done in immutable docker/singularity containers. Therefore, a local installation directory needs to be mounted (including all modified files from the downloading step) to the container as a workaround.

*/

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

Tools

antismashlite Documentation

antiSMASH - the antibiotics and Secondary Metabolite Analysis SHell

https://github.com/antismash/antismashdoi: 10.1093/nar/gkab335License: AGPL v3
Authors