Description

Extracts reads mapped to chromosome 6 and any HLA decoys or chromosome 6 alternates.

Input

Name
Description
Pattern

0 ()

1 ()

Output

Name
Description
Pattern

extracted_reads_fastq ()

log ()

intermediate_sam ()

intermediate_bam ()

intermediate_sorted_bam ()

versions ()

Tools

arcashla Documentation

arcasHLA performs high resolution genotyping for HLA class I and class II genes from RNA sequencing, supporting both paired and single-end samples.

doi: 10.1093/bioinformatics/btz474License: GPL v3
Authors