Description

Standalone version of fieldbioinformatics aligntrim. Soft clips amplicon scheme primer sites in BAM/SAM files.

Input

Name
Description
Pattern

0 ()

1 ()

2 ()

3 ()

sort_bam (boolean)

Optionally sort the BAM file after trimming

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

0 ()

Tools

align_trim Documentation

ARTIC align_trim: A tool for trimming amplicon sequencing primers from aligned reads.

https://github.com/artic-network/align_trimLicense: MIT
Authors