Description

Run the alignment/variant-call/consensus logic of the artic pipeline

Input

Name
Description
Pattern

0 ()

1 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

Output

Name
Description
Pattern

results ()

bam ()

bai ()

bam_trimmed ()

bai_trimmed ()

bam_primertrimmed ()

bai_primertrimmed ()

fasta ()

vcf ()

tbi ()

json ()

versions ()

Tools

artic Documentation

ARTIC pipeline - a bioinformatics pipeline for working with virus sequencing data sequenced with nanopore

https://github.com/artic-network/fieldbioinformaticsLicense: MIT
Authors