Description

Bayesian segmentation of spatial transcriptomics data.

Input

Name
Description
Pattern

0 ()

1 ()

2 ()

3 ()

4 ()

prior_confidence (float)

Confidence of the prior segmentation (optional)

prior_column (string)

Column name in the prior segmentation file that contains the segmentation mask (optional)

polygon_format (string)

Format for output segmentation polygons (default: FeatureCollection)

Output

Name
Description
Pattern

0 ()

0 ()

Tools

baysor Documentation

Baysor is a tool that segments cells using spatial gene expression maps. Optionally, segmentation masks can be given as additional input.

https://github.com/kharchenkolab/Baysordoi: 10.1038/s41587-021-01044-wLicense: MIT license
Authors