Description

Align short or PacBio reads to a reference genome using BBMap

Input

Name
Description
Pattern

0 ()

1 ()

ref (file)

Either "ref" a directory containing an index, the name of another directory with a "ref" subdirectory containing an index or the name of a fasta formatted nucleotide file containing the reference to map to.

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

Tools

bbmap Documentation

BBMap is a short read aligner, as well as various other bioinformatic tools.

License: UC-LBL license (see package)
Authors