Description

Filter out sequences by sequence header name(s)

Input

Name
Description
Pattern

0 ()

1 ()

names_to_filter (string)

String containing names of reads to filter out of the fastq files.

output_format (string)

String with the format of the output file, e.g. fastq.gz, fasta, fasta.bz2

interleaved_output (boolean)

Whether to produce an interleaved fastq output file

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

Tools

bbmap Documentation

BBMap is a short read aligner, as well as various other bioinformatic tools.

License: UC-LBL license (see package)
nf-core pipelines with this module
readmapping
Authors