Description

Adds imputation information metrics to the INFO field based on selected FORMAT tags. Only the IMPUTE2 INFO metric from FORMAT/GP tags is currently available.

Input

Name
Description
Pattern

0 ()

1 ()

2 ()

0 ()

0 ()

Output

Name
Description
Pattern

vcf ()

tbi ()

csi ()

versions ()

Tools

bcftools Documentation

BCFtools is a set of utilities that manipulate variant calls in the Variant Call Format (VCF) and its binary counterpart BCF. All commands work transparently with both VCFs and BCFs, both uncompressed and BGZF-compressed. Most commands accept VCF, bgzipped VCF and BCF with filetype detected automatically even when streaming from a pipe. Indexed VCF and BCF will work in all situations. Un-indexed VCF and BCF and streams will work in most, but not all situations.

https://github.com/samtools/bcftoolsdoi: 10.1093/bioinformatics/btp352License: MIT

bcftools plugin impute-info Documentation

Bcftools plugins are tools that can be used with bcftools to manipulate variant calls in Variant Call Format (VCF) and BCF. The impute-info plugin adds imputation information metrics to the INFO field based on selected FORMAT tags. Only the IMPUTE2 INFO metric from FORMAT/GP tags is currently available

https://github.com/samtools/bcftoolsdoi: 10.1093/bioinformatics/btp352License: MIT
Authors