Description

Extracts fields from VCF or BCF files and outputs them in user-defined format.

Input

Name
Description
Pattern

0 ()

1 ()

2 ()

regions (file)

Optionally, restrict the operation to regions listed in this file.

targets (file)

Optionally, restrict the operation to regions listed in this file (doesn't rely upon index files)

samples (file)

Optional, file of sample names to be included or excluded. e.g. 'file.tsv'

Output

Name
Description
Pattern

0 ()

0 ()

Tools

query Documentation

Extracts fields from VCF or BCF files and outputs them in user-defined format.

doi: 10.1093/bioinformatics/btp352License: MIT
Authors