Description

A program for detecting runs of homo/autozygosity. Only bi-allelic sites are considered.

Input

Name
Description
Pattern

0 ()

1 ()

2 ()

0 ()

1 ()

genetic_map (file)

Genetic map in the format required also by IMPUTE2.

regions_file (file)

Regions can be specified either on command line or in a VCF, BED, or tab-delimited file (the default).

samples_file (file)

File of sample names to include or exclude if prefixed with '^'.

targets_file (file)

Targets can be specified either on command line or in a VCF, BED, or tab-delimited file (the default).

Output

Name
Description
Pattern

0 ()

0 ()

Tools

roh Documentation

A program for detecting runs of homo/autozygosity. Only bi-allelic sites are considered.

doi: 10.1093/bioinformatics/btp352License: MIT
Authors