Description

View, subset and filter VCF or BCF files by position and filtering expression. Convert between VCF and BCF

Input

Name
Description
Pattern

0 ()

1 ()

2 ()

regions (file)

Optionally, restrict the operation to regions listed in this file. e.g. 'file.vcf'

targets (file)

Optionally, restrict the operation to regions listed in this file (doesn't rely upon index files) e.g. 'file.vcf'

samples (file)

Optional, file of sample names to be included or excluded. e.g. 'file.tsv'

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

0 ()

Tools

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View, subset and filter VCF or BCF files by position and filtering expression. Convert between VCF and BCF

doi: 10.1093/bioinformatics/btp352License: MIT
nf-core pipelines with this module
genomeassembly
Authors