Description

Beagle v5.2 is a software package for phasing genotypes and for imputing ungenotyped markers.

Input

Name
Description
Pattern

0 ()

1 ()

refpanel (file)

target reference panel

genmap (file)

a PLINK format genetic map with cM units

*.{map,map.gz,map.zip}

exclsamples (file)

text file containing samples one sample per line to be excluded from the analysis

*.*

exclmarkers (file)

text file containing markers one marker per line to be excluded from the analysis

*.*

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

Tools

beagle5 Documentation

Beagle is a software package for phasing genotypes and for imputing ungenotyped markers.

doi: 10.1016/j.ajhg.2021.08.005; doi:10.1016/j.ajhg.2018.07.015License: GPL v3
Authors