Description

A scalable tool for large-scale analysis of Biosynthetic Gene Clusters (BGCs). It takes genome regions in GenBank format along with an HMM database and produces a SQLite database and FASTA outputs of predicted features.

Input

Name
Description
Pattern

0 ()

1 ()

hmmdb (directory)

Path to the BiG-SLiCE HMM database folder containing biosynthetic and sub Pfams for annotation, in the required BiG-SLiCE format. An example directory in compressed archive format can be found here: https://github.com/medema-group/bigslice/releases/download/v2.0.0rc/bigslice-models.2022-11-30.tar.gz

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

Tools

bigslice Documentation

A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data

doi: 10.1093/gigascience/giaa154License: AGPL v3-or-later
Authors