Description

Bioawk is an extension to Brian Kernighan's awk, adding the support of several common biological data formats.

Input

Name
Description
Pattern

0 ()

1 ()

program_file (file)

Optional file containing logic for awk to execute. If you don't wish to use a file, you can use ext.args2 to specify the logic.

*

disable_redirect_output (boolean)

Disable the redirection of awk output to a given file. This is useful if you want to use awk's built-in redirect to write files instead of the shell's redirect.

output_file_extension (string)

The suffix to add to the output file name.

Output

Name
Description
Pattern

0 ()

0 ()

Tools

bioawk Documentation

BWK awk modified for biological data

License: Free software license (https://github.com/lh3/bioawk/blob/master/README.awk#L1)
Authors