Description

Use k-mers to rapidly subtype S. enterica genomes

Input

Name
Description
Pattern

0 ()

1 ()

scheme_metadata (file)

Scheme subtype metadata table

*.{tab,tsv,txt}

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

0 ()

Tools

biohansel Documentation

Subtype Salmonella enterica genomes using 33bp k-mer typing schemes.

doi: 10.1101/2020.01.10.902056License: Apache-2.0 license
Authors