Description

Uses Bismark report files of several samples in a run folder to generate a graphical summary HTML report.

Input

Name
Description
Pattern

bam (list)

List of Bismark alignment BAM filenames

*.bam

align_report (file)

Bismark alignment reports

*report.txt

dedup_report (file)

Bismark deduplication reports

*.deduplication_report.txt

splitting_report (file)

Bismark splitting reports

*splitting_report.txt

mbias (file)

Text file containing methylation bias information

*.txt

Output

Name
Description
Pattern

0 ()

0 ()

Tools

bismark Documentation

Bismark is a tool to map bisulfite treated sequencing reads and perform methylation calling in a quick and easy-to-use fashion.

doi: 10.1093/bioinformatics/btr167License: GPL-3.0-or-later
Authors