Description

Align reads to a reference genome using bowtie2

Input

Name
Description
Pattern

0 ()

1 ()

0 ()

1 ()

0 ()

1 ()

save_unaligned (boolean)

Save reads that do not map to the reference (true) or discard them (false) (default: false)

sort_bam (boolean)

use samtools sort (true) or samtools view (false)

true or false

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

Tools

bowtie2 Documentation

Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences.

doi: 10.1186/gb-2009-10-3-r25License: GPL-3.0-or-later
Authors