Description

Gene prediction in novel genomes using RNA-seq and protein homology information

Input

Name
Description
Pattern

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1 ()

bam (file)

BAM file of RNA-seq data to be passed to --bam

*.bam

rnaseq_sets_dirs (file)

Directories of RNA-seq data sets to be passed to --rnaseq_sets_dirs

rnaseq_sets_ids (file)

IDs of RNA-seq data sets to be passed to --rnaseq_sets_ids

proteins (file)

Protein evidence to be passed to --proteins

*.{fasta,fa,fas,faa}

hintsfile (file)

Hintsfile to be passed to --hintsfile

*.{gff, gtf, gff3}

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

Tools

braker3 Documentation

BRAKER3 is a pipeline for fully automated prediction of protein coding gene structures using protein and RNA-seq and protein homology information

doi: 10.13140/RG.2.2.20047.36004License: Artistic-1.0
Authors