Description
Benchmarking Universal Single Copy Orthologs
Input
Nucleic or amino acid sequence file in FASTA format.
*.{fasta,fna,fa,fasta.gz,fna.gz,fa.gz}
The mode to run Busco in. One of genome, proteins, or transcriptome
{genome,proteins,transcriptome}
Output
Fasta file of single copy proteins (transcriptome mode)
single_copy_proteins.faa
Six frame translations of each transcript made by the transcriptome mode
translated_proteins
Tools
busco Documentation
BUSCO provides measures for quantitative assessment of genome assembly, gene set, and transcriptome completeness based on evolutionarily informed expectations of gene content from near-universal single-copy orthologs selected from OrthoDB.