Description

Benchmarking Universal Single Copy Orthologs

Input

Name
Description
Pattern

0 ()

1 ()

mode (string)

The mode to run Busco in. One of genome, proteins, or transcriptome

{genome,proteins,transcriptome}

lineage (string)

The BUSCO lineage to use, or "auto", "auto_prok" or "auto_euk" to automatically select lineage

busco_lineages_path (directory)

Path to local BUSCO lineages directory.

config_file (file)

Path to BUSCO config file.

clean_intermediates (boolean)

Flag to remove intermediate files.

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

Tools

busco Documentation

BUSCO provides measures for quantitative assessment of genome assembly, gene set, and transcriptome completeness based on evolutionarily informed expectations of gene content from near-universal single-copy orthologs selected from OrthoDB.

https://gitlab.com/ezlab/buscodoi: 10.1007/978-1-4939-9173-0_14License: MIT
nf-core pipelines with this module
blobtoolkitgenomenotetreeval
Authors