Description

Performs fastq alignment to a fasta reference using BWA

Input

Name
Description
Pattern

0 ()

1 ()

0 ()

1 ()

0 ()

1 ()

sort_bam (boolean)

use samtools sort (true) or samtools view (false)

true or false

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

Tools

bwamem2 Documentation

BWA-mem2 is a software package for mapping DNA sequences against a large reference genome, such as the human genome.

doi: 10.1109/IPDPS.2019.00041License: MIT
nf-core pipelines with this module
genomeassemblyreadmapping
Authors