Description

Align fastq reads to a fasta reference using bwa-mem3

Input

Name
Description
Pattern

0 ()

1 ()

0 ()

1 ()

0 ()

1 ()

sort_bam (boolean)

use samtools sort (true) or samtools view (false)

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

0 ()

Tools

bwamem3 Documentation

Short-read aligner derived from bwa-mem2 with correctness fixes, performance improvements, and methylation-aware alignment.

License: MIT AND Apache-2.0

samtools Documentation

Tools for dealing with SAM, BAM and CRAM files

doi: 10.1093/bioinformatics/btp352License: MIT
Authors