Description

Performs fastq alignment to a fasta reference using BWA-MEME

Input

Name
Description
Pattern

0 ()

1 ()

0 ()

1 ()

0 ()

1 ()

sort_bam (boolean)

use samtools sort (true) or samtools view (false)

true or false

mbuffer (integer)

memory for mbuffer in megabytes (default 3072)

samtools_threads (integer)

number of threads for samtools (default 2)

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

Tools

bwameme Documentation

Faster BWA-MEM2 using learned-index

doi: 10.1093/bioinformatics/btac137License: MIT
Authors