Description

Accurate assembly of segmental duplications, satellites, and allelic variants from high-fidelity long reads.

Input

Name
Description
Pattern

0 ()

1 ()

mode (string)

Canu mode depending on the input data (source and error rate)

-pacbio|-nanopore|-pacbio-hifi

genomesize (string)

An estimate of the size of the genome. Common suffices are allowed, for example, 3.7m or 2.8g

[g|m|k]

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

Tools

canu Documentation

Canu is a fork of the Celera Assembler designed for high-noise single-molecule sequencing.

https://github.com/marbl/canudoi: 10.1101/gr.215087.116License: GPL v2 and others
Authors