Description

Taxonomic classification plus read-based abundance estimation from long DNA sequences and metagenome assembled genomes (e.g. contigs, MAGs / bins).

Input

Name
Description
Pattern

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mode (string)

Mode of operation of CAT_pack reads, "mcr": integrate annotations from MAGs (bins), contigs, and reads; "cr": integrate annotations from contigs and reads; "mr": integrate annotations from MAGs (bins) and reads.

mcr|cr|mr

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Output

Name
Description
Pattern

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Tools

catpack Documentation

CAT/BAT: tool for taxonomic classification of contigs and metagenome-assembled genomes (MAGs)

doi: 10.1186/s13059-019-1817-xLicense: MIT
Authors