Description

Taxonomic classification plus read-based abundance estimation from long DNA sequences and metagenome assembled genomes (e.g. contigs, MAGs / bins).

Input

Name
Description
Pattern

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1 ()

0 ()

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1 ()

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1 ()

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Output

Name
Description
Pattern

rat_log ()

complete_abundance ()

contig_abundance ()

read2classification ()

alignment_diamond ()

contig2classification ()

cat_log ()

orf2lca ()

faa ()

gff ()

unmapped_diamond ()

unmapped_fasta ()

unmapped2classification ()

versions ()

Tools

catpack Documentation

CAT/BAT: tool for taxonomic classification of contigs and metagenome-assembled genomes (MAGs)

doi: 10.1186/s13059-019-1817-xLicense: MIT
Authors