Description

Module to build the reference needed by the 10x Genomics Cell Ranger tool. Uses the cellranger mkref command.

Input

Name
Description
Pattern

fasta (file)

Reference genome FASTA file

*.{fasta,fa}

gtf (file)

Reference transcriptome GTF file

*.gtf

reference_name (string)

The name to give the new reference folder

str

Output

Name
Description
Pattern

0 ()

0 ()

Tools

cellranger Documentation

Cell Ranger by 10x Genomics is a set of analysis pipelines that process Chromium single-cell data to align reads, generate feature-barcode matrices, perform clustering and other secondary analysis, and more.

License: 10X Genomics EULA
Authors