Description
Module to use Cell Ranger's pipelines to analyze sequencing data produced from various Chromium technologies, including Single Cell Gene Expression, Single Cell Immune Profiling, Feature Barcoding, and Cell Multiplexing.
Input
Folder containing Cellranger gene expression reference. Can also be a gzipped tarball
*.tar.gz
Folder containing Cellranger V(D)J reference. Can also be a gzipped tarball
*.tar.gz
The BEAM antigens set to control status, with corresponding MHC alleles, in Feature Barcode CSV format
*.csv
Path to a custom Cell Multiplexing CSV reference IDs, or the cmo-set
option in Cellranger
*.csv
A CSV file appended to the Cellranger multi config linking samples to CMO IDs
*.csv
A CSV file that specifies the barcode-sample assignment in Cell Multiplexing analysis
*.csv
Tools
cellranger Documentation
Cell Ranger by 10x Genomics is a set of analysis pipelines that process Chromium single-cell data to align reads, generate feature-barcode matrices, perform clustering and other secondary analysis, and more.