Description

Module to create fastqs needed by the 10x Genomics Cell Ranger ATAC tool. Uses the cellranger-atac mkfastq command.

Input

Name
Description
Pattern

bcl (file)

Base call files

*.bcl.bgzf

csv (file)

Sample sheet

*.csv

Output

Name
Description
Pattern

0 ()

0 ()

Tools

cellranger-atac Documentation

Cell Ranger ATAC by 10x Genomics is a set of analysis pipelines that process Chromium single-cell data to align reads, generate feature-barcode matrices, perform clustering and other secondary analysis, and more.

License: 10x Genomics EULA
Authors