Description
Module to build the reference needed by the 10x Genomics Cell Ranger ATAC tool. Uses the cellranger-atac mkref command.
Input
Name
Description
Pattern
JSON-like config file holding organism, genome, reference fasta path, reference annotation gtf path, contigs that should be excluded and sequence format motif file path
config
Tools
cellranger-atac Documentation
Cell Ranger ATAC is a set of analysis pipelines that process Chromium Single Cell ATAC data.
License: 10x Genomics EULA