Description

Classifies metagenomic sequence data

Input

Name
Description
Pattern

0 ()

1 ()

db (directory)

Path to directory containing centrifuge database files

save_unaligned (boolean)

If true unmapped fastq files are saved

save_aligned (boolean)

If true mapped fastq files are saved

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

Tools

centrifuge Documentation

Centrifuge is a classifier for metagenomic sequences.

doi: 10.1101/gr.210641.116License: GPL v3
Authors