Description

Build centrifuger database for taxonomic profiling

Input

Name
Description
Pattern

0 ()

1 ()

taxonomy_nodes (file)

File describing parent-child relationships of a taxonomic tree in NCBI nodes.dmp format

taxonomy_names (file)

File describing individual members of a taxonomic tree in NCBI names.dmp format

conversion_table (file)

Required: a tab-seperated file, mapping sequence IDs to taxonomy IDs.

Output

Name
Description
Pattern

0 ()

0 ()

Tools

centrifuger Documentation

Lossless compression of microbial genomes for efficient and accurate metagenomic sequence classification.

doi: 10.1186/s13059-024-03244-4License: MIT
Authors