Description

Classification of sequencing reads using the Centrifuger tool.

Input

Name
Description
Pattern

0 ()

1 ()

0 ()

1 ()

save_unclassified (boolean)

Optional - if true, output unclassified reads.

save_classified (boolean)

Optional - if true, output classified reads.

barcode (file)

Optional barcode file.

umi (file)

Optional UMI file.

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

0 ()

Tools

centrifuger Documentation

Lossless compression of microbial genomes for efficient and accurate metagenomic sequence classification.

doi: 10.1186/s13059-024-03244-4License: MIT
Authors