Description

Quantification (taxonomic profiling) of Centrifuger model

Input

Name
Description
Pattern

0 ()

1 ()

0 ()

1 ()

taxonomy_nodes (file)

File describing parent-child relationships of a taxonomic tree in NCBI nodes.dmp format

taxonomy_names (file)

File describing individual members of a taxonomic tree in NCBI names.dmp format

size_table (file)

Optional - Table of contig (or genome) sizes.

Output

Name
Description
Pattern

0 ()

0 ()

Tools

centrifuger Documentation

Centrifuger is an efficient taxonomic classification method that compares sequencing reads against a microbial genome database.

doi: 10.1186/s13059-024-03244-4License: MIT
Authors