Description

CheckM provides a set of tools for assessing the quality of genomes recovered from isolates, single cells, or metagenomes.

Input

Name
Description
Pattern

0 ()

1 ()

fasta_ext (string)

The file-type extension suffix of the input FASTA files (e.g., fasta, fna, fa, fas)

db (directory)

Optional directory pointing to checkM database to prevent re-downloading

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

0 ()

Tools

checkm Documentation

Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes.

https://github.com/Ecogenomics/CheckMdoi: 10.1101/gr.186072.114License: GPL v3
Authors