Description

Adapter and quality trimming of short-read FASTQ data using chelae.

Input

Name
Description
Pattern

0 ()

1 ()

adapter_fasta (file)

Optional FASTA file of adapter sequences. The best-matching adapter will be trimmed. Use an empty list [] when not supplying an adapter file; adapter kits can be specified via ext.args using --kit instead.

*.{fasta,fna,fas,fa}

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

0 ()

Tools

chelae Documentation

A fast, accurate, multi-threaded toolkit for trimming and filtering short-read FASTQ data, written in Rust. Outputs BGZF-compressed FASTQ and a fastp-compatible JSON report suitable for MultiQC.

License: MIT
Authors