Description

Determine the allelic profiles of a genome using a pre-defined schema

Input

Name
Description
Pattern

0 ()

1 ()

0 ()

1 ()

Output

Name
Description
Pattern

stats ()

contigs_info ()

alleles ()

log ()

paralogous_counts ()

paralogous_loci ()

cds_coordinates ()

invalid_cds ()

loci_summary_stats ()

versions ()

Tools

chewbbaca Documentation

A complete suite for gene-by-gene schema creation and strain identification.

https://github.com/B-UMMI/chewBBACAdoi: 10.1099/mgen.0.000166License: GPL v3
Authors