Description

Performs preprocessing and alignment of chromatin fastq files to fasta reference files using chromap.

Input

Name
Description
Pattern

0 ()

1 ()

0 ()

1 ()

0 ()

1 ()

barcodes (file)

Cell barcode files

whitelist (file)

Cell barcode whitelist file

chr_order (file)

Custom chromosome order

pairs_chr_order (file)

Natural chromosome order for pairs flipping

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

0 ()

0 ()

Tools

chromap Documentation

Fast alignment and preprocessing of chromatin profiles

License: GPL v3
Authors